Marker Enrichment Modeling (MEM) software is a quantitative system for objectively labeling and characterizing complex cell populations by quantifying feature enrichment and reporting a text label. MEM label reporting provides a new way to objectively and quantitatively communicate cell type in studies of complex, dynamic tissue microenvironments, such as stem cell niches, immune responses, and human tumors.

TagDock is an efficient rigid body molecular docking algorithm that generates three-dimensional models of oligomeric biomolecular complexes in instances where there is limited experimental restraint data to guide the docking calculations. Through “distance difference analysis” TagDock additionally recommends followup experiments to further discriminate  divergent (score-degenerate) clusters of TagDock’s initial solution models.

Self-report instruments used to determine severity of lymphedema in various parts of the body.  Copyrighted material is available free of charge to those individuals who have a full-time academic appointment at an academic or other non-profit research institution for non-commercial purposes. You may submit a Non-Commercial Use Request Form on the  request for permission page.

MOOSES™ (Multi-Option Observation System for Experimental Studies) software makes it easy to collect and analyze data from any type of real time event. Data can be collected using a desktop PC, a laptop, a handheld PC, or a windows tablet and later analyzed across several dimensions. Data collected from digital audio and video files using ProcoderDV™ can also be analyzed using MOOSES™.

The Adventures of Jasper Woodbury™ consists of 12 videodisc-based adventures that focus on mathematical problem finding and problem solving. In particular, each adventure provides multiple opportunities for problem solving, reasoning, communication and making connections to other areas such as science, social studies, literature and history (NCTM, 1989; 1991).

LeachXS is a data management and visualization tool that provides you with a clear overview of the results of leaching tests and allows you to compare them to relevant policy and regulations. The tool allows users to evaluate and characterize the release of material constituents based on comparisons derived from leaching test results for a wide range of materials and waste types (e.g., secondary or recycled materials, stabilized waste and construction materials).

BCL::Commons™ (also known as the BioChemistry Library Project) is an object oriented C++ programming library. The library is designed to simulate biological molecules – proteins and peptides in particular – as well as small chemicals such as therapeutics. It comprises mathematical methods to evaluate the energy of these molecules in their natural environment.

ReconFTI is a software that reconstructs functional tensor images from conventional functional magnetic resonance images. Reconstructed functional tensor images can be used to delineate functional pathways in the human brain. These functional pathways may help neuroscientists understand how different cortical regions of the human brain interact with each other.

Update (06/23/2026): MFA Suite has new updates for: INCA, ETA and PIRAMID.   

The MFA Suite™ (Metabolic Flux Analysis Suite) is a software toolkit providing a powerful approach for quantifying the rates, or “fluxes”, of intracellular metabolic pathways.  The information generated from the MFA Suite of tools is useful for identifying pathway bottlenecks, elucidating network regulation, and quantifying the flow or fate of carbon within a biological system. By systematically accounting for all extracellular carbon inputs and outputs and all major intracellular pathways, MFA can be used to reconstruct comprehensive flux maps depicting cell metabolism.